STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104608738WD repeat-containing protein RUP2-like. (431 aa)    
Predicted Functional Partners:
LOC104609709
DNA excision repair protein ERCC-8-like.
  
  
 0.935
LOC104585584
Transcription factor HY5-like.
   
 0.932
LOC104592388
Transcription factor HY5.
   
 0.930
LOC104595355
Transcription factor HY5-like.
   
 0.930
LOC104594115
E3 ubiquitin-protein ligase COP1.
  
 
 
0.912
LOC104606508
E3 ubiquitin-protein ligase COP1.
  
 
 
0.912
LOC104601256
Protein DAMAGED DNA-BINDING 2.
    
  0.911
LOC104589637
Light-mediated development protein DET1 isoform X1.
    
  0.903
LOC104596121
WD repeat-containing protein RUP2.
  
  
 
0.901
LOC104605498
Protein GIGANTEA-like isoform X1.
     
  0.900
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.