STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104609287Protein TIFY 10a-like. (258 aa)    
Predicted Functional Partners:
LOC104596994
Coronatine-insensitive protein 1-like.
    
 0.971
LOC104601209
Coronatine-insensitive protein 1-like.
    
 0.971
LOC104608778
Transcription factor MYC2-like.
   
 0.806
LOC104610347
Transcription factor MYC2-like.
   
 0.806
LOC104604676
Transcription factor MYC2.
    
 0.703
LOC104611993
Serine--glyoxylate aminotransferase.
   
  
 0.595
LOC104592105
Ninja-family protein mc410.
    
 
 0.536
SEP3
Agamous-like MADS-box protein AGL9 homolog.
      
 0.489
LOC104592901
SNF1-related protein kinase regulatory subunit gamma-1.
      
 0.485
LOC104588488
Protein TIFY 5A-like.
   
 
 0.477
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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