STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104609770BTB/POZ and TAZ domain-containing protein 4. (411 aa)    
Predicted Functional Partners:
LOC104607918
DNA repair protein UVH3 isoform X1.
   
 0.660
LOC104606812
Uncharacterized protein LOC104606812.
   
 0.650
LOC104589649
Histone acetyltransferase GCN5 isoform X1.
    
 0.629
LOC104611936
Uncharacterized protein LOC104611936 isoform X1.
    
 0.629
LOC104587396
Histone-lysine N-methyltransferase SUVR5.
    
 0.618
LOC104595796
Histone-lysine N-methyltransferase SUVR5-like isoform X1.
    
 0.618
LOC104610188
Uncharacterized protein At5g08430-like isoform X1.
   
 0.610
LOC104600836
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.603
LOC104589335
Separase isoform X1.
   
 
 0.550
LOC104595717
Deoxyuridine 5'-triphosphate nucleotidohydrolase-like.
   
 0.548
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.