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XP_010240812.1 protein (Nelumbo nucifera) - STRING interaction network
"XP_010240812.1" - Charged multivesicular body protein 7 isoform X1 in Nelumbo nucifera
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_010240812.1Charged multivesicular body protein 7 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns; Belongs to the SNF7 family (433 aa)    
Predicted Functional Partners:
XP_010267087.1
Vacuolar protein sorting-associated protein 32 homolog 2-like; Belongs to the SNF7 family (218 aa)
     
  0.945
XP_010244367.1
Vacuolar protein sorting-associated protein 32 homolog 2; Belongs to the SNF7 family (218 aa)
     
  0.945
XP_010270292.1
Vacuolar protein sorting-associated protein 20 homolog 2; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns; Belongs to the SNF7 family (242 aa)
     
   
  0.827
XP_010258084.1
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit (439 aa)
       
      0.802
XP_010260145.1
Leukotriene A-4 hydrolase homolog isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (612 aa)
           
  0.760
XP_010267215.1
Vacuolar protein sorting-associated protein 24 homolog 1-like; Belongs to the SNF7 family (229 aa)
     
 
  0.754
XP_010243255.1
Vacuolar protein sorting-associated protein 24 homolog 1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns; Belongs to the SNF7 family (228 aa)
     
 
  0.754
XP_010268243.1
Vacuolar protein sorting-associated protein 25 (179 aa)
     
   
  0.712
XP_010273760.1
Charged multivesicular body protein 5-like; Belongs to the SNF7 family (270 aa)
     
   
  0.700
XP_010262995.1
Charged multivesicular body protein 5-like; Belongs to the SNF7 family (235 aa)
     
   
  0.700
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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