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XP_010240913.1 protein (Nelumbo nucifera) - STRING interaction network
"XP_010240913.1" - Pentatricopeptide repeat-containing protein At2g36980, mitochondrial in Nelumbo nucifera
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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[Homology]
Score
XP_010240913.1Pentatricopeptide repeat-containing protein At2g36980, mitochondrial; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments (629 aa)    
Predicted Functional Partners:
XP_010258674.1
CASP-like protein 1B2; Belongs to the Casparian strip membrane proteins (CASP) family (199 aa)
           
  0.691
XP_010252743.1
Uncharacterized protein LOC104594228; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments (210 aa)
           
  0.691
XP_010245703.1
Uncharacterized protein LOC104589179 isoform X1 (393 aa)
           
  0.691
XP_010243027.1
Protease Do-like 1, chloroplastic isoform X1 (447 aa)
           
  0.687
XP_010277332.1
ADP-ribosylation factor GTPase-activating protein AGD4-like isoform X1 (789 aa)
           
  0.618
XP_010263710.1
Transcription factor bHLH95 (289 aa)
           
  0.618
XP_010260640.1
valine--tRNA ligase, chloroplastic/mitochondrial 2 isoform X1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns; Belongs to the class-I aminoacyl-tRNA synthetase family (965 aa)
           
  0.618
XP_010258150.1
Chaperone protein ClpB3, chloroplastic; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns; Belongs to the ClpA/ClpB family (978 aa)
           
  0.618
XP_010275882.1
Glycerol-3-phosphate acyltransferase 1-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns (550 aa)
           
  0.579
XP_010243670.1
Glycerol-3-phosphate acyltransferase 1-like (537 aa)
           
  0.579
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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