STRINGSTRING
XP_010240943.1 protein (Nelumbo nucifera) - STRING interaction network
"XP_010240943.1" - Protein YLS9 in Nelumbo nucifera
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_010240943.1Protein YLS9; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments (226 aa)    
Predicted Functional Partners:
XP_010250368.1
Late embryogenesis abundant protein 1 (109 aa)
           
  0.559
XP_010278351.1
Uncharacterized protein LOC104612590 (344 aa)
           
  0.551
XP_010264711.1
Uncharacterized protein LOC104602642; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns (359 aa)
           
  0.483
XP_010244844.1
Uncharacterized protein LOC104588560; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (543 aa)
           
  0.483
XP_010244242.1
Uncharacterized protein LOC104588119 (351 aa)
           
  0.444
XP_010242591.1
Uncharacterized protein LOC104586908; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns (354 aa)
           
  0.444
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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