STRINGSTRING
XP_010240951.1 protein (Nelumbo nucifera) - STRING interaction network
"XP_010240951.1" - Calcium homeostasis endoplasmic reticulum protein-like in Nelumbo nucifera
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_010240951.1Calcium homeostasis endoplasmic reticulum protein-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns (696 aa)    
Predicted Functional Partners:
XP_010258223.1
Splicing factor 3B subunit 1; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 EST, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (1275 aa)
     
 
  0.991
XP_010245312.1
Splicing factor 3B subunit 2-like (581 aa)
     
 
  0.984
XP_010242002.1
Splicing factor 3B subunit 2-like (577 aa)
     
 
  0.984
XP_010246794.1
Cell division cycle 5-like protein; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (1144 aa)
     
 
  0.981
XP_010266513.1
Splicing factor SF3a60 homolog; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns (509 aa)
     
 
  0.980
XP_010244756.1
116 kDa U5 small nuclear ribonucleoprotein component-like (989 aa)
     
 
  0.964
XP_010267269.1
Splicing factor 3A subunit 2 (357 aa)
     
 
  0.947
XP_010244955.1
pre-mRNA-splicing factor SYF1 (919 aa)
     
 
  0.934
XP_010261378.1
dnaJ protein ERDJ2A; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns (686 aa)
     
 
  0.929
XP_010262363.1
Uncharacterized protein At4g14342 isoform X1 (87 aa)
     
 
  0.925
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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