STRINGSTRING
XP_010241029.1 protein (Nelumbo nucifera) - STRING interaction network
"XP_010241029.1" - Uncharacterized protein LOC104585750 in Nelumbo nucifera
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XP_010241029.1Uncharacterized protein LOC104585750 (171 aa)    
Predicted Functional Partners:
XP_010262914.1
UPF0503 protein At3g09070, chloroplastic-like (646 aa)
       
 
  0.878
XP_010256670.1
UPF0503 protein At3g09070, chloroplastic-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (647 aa)
       
 
  0.878
XP_010266134.1
Protein STRICTOSIDINE SYNTHASE-LIKE 7-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns (384 aa)
           
  0.697
XP_010261575.1
Beclin-1-like protein (524 aa)
           
  0.600
XP_010260805.1
Metacaspase-4 (416 aa)
           
  0.506
XP_010248373.1
Metacaspase-5-like; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns (416 aa)
           
  0.506
XP_010251300.1
B3 domain-containing protein Os03g0120900-like (453 aa)
           
  0.487
XP_010241058.1
B3 domain-containing protein Os03g0120900-like (431 aa)
           
  0.487
XP_010275156.1
Uncharacterized protein LOC104610301; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns (184 aa)
           
  0.444
XP_010266420.1
Uncharacterized protein LOC104603938; Derived by automated computational analysis using gene prediction method- Gnomon. Supporting evidence includes similarity to- 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns (174 aa)
           
  0.444
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
Server load: low (17%) [HD]