STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104604610Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic. (967 aa)    
Predicted Functional Partners:
LOC104611138
Vacuolar protein sorting-associated protein 18 homolog isoform X1.
  
 
 0.987
LOC104607394
Protein VACUOLELESS1; Required for vacuole biogenesis and vacuole enlargment in dividing and expanding cells. Involved in the docking or fusion of prevacuolar vesicles; Belongs to the VPS16 family.
    
 0.984
LOC104588036
Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.
   
 0.968
LOC104606590
Vacuolar protein sorting-associated protein 11 homolog; Involved in regulating membrane fusion at the tonoplast and the prevacuolar compartment.
   
 0.968
LOC104586323
Vacuolar protein-sorting-associated protein 33 homolog; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.964
LOC104599275
Protein SAND isoform X1.
    
 
 0.920
LOC104612630
Uncharacterized protein LOC104612630 isoform X1.
    
 
 0.919
LOC104601402
VAMP-like protein YKT61; Belongs to the synaptobrevin family.
    
 
 0.918
LOC104601865
vam6/Vps39-like protein.
   
 0.906
LOC104598235
vam6/Vps39-like protein isoform X1.
   
 0.906
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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