STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104606875Ethylene-responsive transcription factor ERF010. (153 aa)    
Predicted Functional Partners:
LOC104587396
Histone-lysine N-methyltransferase SUVR5.
    
 0.518
LOC104595796
Histone-lysine N-methyltransferase SUVR5-like isoform X1.
    
 0.518
LOC104611565
Transcription factor TGA2.
      
 0.489
LOC104606903
Kinesin-like calmodulin-binding protein homolog isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 0.487
LOC104588409
Serine/threonine-protein phosphatase.
    
 0.477
LOC104613386
Serine/threonine-protein phosphatase.
    
 0.477
LOC104587251
Embryonic protein DC-8-like.
    
 0.471
LOC104612804
tRNA wybutosine-synthesizing protein 2/3/4 isoform X1.
    
  0.435
LOC104590239
Chromatin structure-remodeling complex protein SYD isoform X1.
   
 0.422
Your Current Organism:
Nelumbo nucifera
NCBI taxonomy Id: 4432
Other names: Indian lotus, N. nucifera, Nelumbo nucifera Gaertn., padma, sacred lotus
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