STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKH86758.1Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)    
Predicted Functional Partners:
AKH83218.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.969
AKH83219.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.953
AKH84512.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.914
AKH83217.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.900
AKH84511.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.885
AKH83216.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.853
AKH84509.1
Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.788
AKH83215.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
AKH86759.1
Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.661
AKH84508.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.558
Your Current Organism:
Streptomyces sp. CNQ509
NCBI taxonomy Id: 444103
Other names: S. sp. CNQ-509, Streptomyces sp. CNQ-509
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