STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1130PFAM: alpha amylase catalytic region; glycoside hydrolase starch-binding; alpha amylase all-beta; SMART: alpha amylase catalytic sub domain; alpha amylase all-beta; KEGG: sde:Sde_2938 ATPase. (566 aa)    
Predicted Functional Partners:
Amir_6067
KEGG: ade:Adeh_1056 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 
0.949
Amir_5114
KEGG: nmu:Nmul_A1401 glycogen debranching protein GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.936
Amir_6074
PFAM: aminoglycoside phosphotransferase; KEGG: rce:RC1_0516 trehalose synthase.
  
 0.935
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 
0.932
Amir_6071
KEGG: gsu:GSU0371 carbohydrate phosphorylase family protein; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
  
 0.928
Amir_3009
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: lch:Lcho_3323 alpha amylase catalytic region.
 
  
 0.927
Amir_1134
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: alpha-glucosidase; K01187 alpha-glucosidase.
 
  
 0.926
Amir_5113
Malto-oligosyltrehalose synthase; KEGG: reu:Reut_B4234 alpha amylase domain- containing protein; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
  
 
 0.918
Amir_5116
4-alpha-glucanotransferase; KEGG: bpt:Bpet2366 hypothetical protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
  
 
 0.918
Amir_6057
PFAM: glycoside hydrolase family 57; KEGG: scl:sce1626 hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
     
 0.907
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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