STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1704Spermidine synthase-like protein; KEGG: mxa:MXAN_2295 hypothetical protein. (287 aa)    
Predicted Functional Partners:
speH
S-adenosylmethionine decarboxylase proenzyme; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine; Belongs to the prokaryotic AdoMetDC family. Type 1 subfamily.
  
  
 0.779
Amir_2334
PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein; KEGG: hhe:HH1147 flagellar motor switch protein FliM.
    
   0.600
Amir_0345
KEGG: hypothetical protein; K05747 Wiskott-Aldrich syndrome protein.
  
     0.598
Amir_1705
PFAM: protein of unknown function DUF1304; KEGG: atc:AGR_L_3168 hypothetical protein.
       0.547
Amir_1993
PFAM: protein of unknown function DUF1469; KEGG: gbm:Gbem_1384 protein of unknown function DUF1469.
  
     0.414
Amir_1149
Acetyltransferase; KEGG: scl:sce0310 acetyltransferase.
  
     0.413
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.