STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_1850PFAM: Ricin B lectin; peptidase alpha-lytic pro domain; peptidase S1 and S6 chymotrypsin/Hap; SMART: Ricin B lectin; KEGG: mxa:MXAN_5466 peptidase, S1E (streptogrisin A) subfamily. (496 aa)    
Predicted Functional Partners:
Amir_6012
KEGG: hypothetical protein.
 
   
 0.722
Amir_1851
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dde:Dde_3083 glyoxalase family protein.
       0.474
Amir_5334
PFAM: chitin-binding domain 3 protein; Carbohydrate- binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: hypothetical protein.
  
     0.453
Amir_6431
PFAM: WD-40 repeat protein; pentapeptide repeat protein; SMART: WD-40 repeat protein; KEGG: scl:sce3623 hypothetical protein.
  
 
 0.440
Amir_3958
PFAM: Pectate lyase/Amb allergen; SMART: Pectate lyase/Amb allergen; KEGG: sde:Sde_0943 ribosomal protein S5.
  
     0.416
Amir_1869
SMART: Parallel beta-helix repeat; KEGG: scl:sce5350 putative secreted protein.
  
     0.402
Amir_5466
PFAM: ATP-binding region ATPase domain protein; KEGG: mxa:MXAN_1393 ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain protein.
  
     0.401
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.