STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2048PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: cak:Caul_2415 alpha-N-arabinofuranosidase. (679 aa)    
Predicted Functional Partners:
Amir_4621
PFAM: Ricin B lectin; glycoside hydrolase family 5; SMART: Ricin B lectin; KEGG: scl:sce0748 Ricin precursor and Poly(3- hydroxybutyrate) depolymerase fusion; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
     0.737
Amir_3107
PFAM: protein of unknown function DUF1680; Ricin B lectin; KEGG: hypothetical protein.
 
   
 0.690
Amir_4198
Pectinesterase; KEGG: xca:xccb100_0130 exported pectinesterase; PFAM: Pectinesterase; Ricin B lectin; SMART: Ricin B lectin.
  
  
 0.649
Amir_2931
PFAM: WD40 domain protein beta Propeller; KEGG: ade:Adeh_2230 hypothetical protein.
  
     0.648
Amir_4964
PFAM: Pectinesterase; Ricin B lectin; Pectate lyase/Amb allergen; SMART: Ricin B lectin; Parallel beta-helix repeat; Pectate lyase/Amb allergen; KEGG: bha:BH0698 pectate lyase.
  
  
 0.613
Amir_1971
PFAM: alpha-L-arabinofuranosidase B; Glycosyl hydrolase family 32 domain protein; KEGG: scl:sce1247 hypothetical protein.
 
   
 0.601
Amir_4149
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: dsh:Dshi_3592 Cna B domain-containing protein.
  
     0.515
Amir_3108
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: hypothetical protein.
 
 
 0.498
Amir_4663
PFAM: Pectinesterase; KEGG: xop:PXO_00373 pectinesterase.
  
  
 0.494
Amir_2836
PFAM: protein of unknown function DUF1680; KEGG: hypothetical protein.
 
   
 0.478
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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