STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2093PFAM: lipid A biosynthesis acyltransferase; KEGG: gsu:GSU0243 hypothetical protein. (310 aa)    
Predicted Functional Partners:
Amir_2092
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: noc:Noc_2982 CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
 0.976
Amir_2094
PFAM: glycosyl transferase group 1; KEGG: acp:A2cp1_4300 phosphatidylinositol alpha- mannosyltransferase.
 
   
 0.962
Amir_2095
PFAM: NUDIX hydrolase; KEGG: pzu:PHZ_c0948 mutator MutT protein.
 
     0.938
Amir_1382
PFAM: glycosyl transferase group 1; KEGG: acr:Acry_1803 glycosyl transferase, group 1.
 
   
 0.754
Amir_2090
PFAM: histidine triad (HIT) protein; KEGG: pca:Pcar_1504 HIT (HINT, histidine triad) family protein.
  
  
 0.677
Amir_0259
PFAM: alpha/beta hydrolase fold; KEGG: acp:A2cp1_0551 alpha/beta hydrolase fold protein.
  
     0.601
Amir_2091
Hypothetical protein.
       0.588
Amir_2222
RecB family exonuclease-like protein; KEGG: hypothetical protein.
  
     0.546
Amir_0935
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ank:AnaeK_3014 UBA/ThiF-type NAD/FAD binding protein.
 
     0.512
Amir_3507
KEGG: hypothetical protein.
  
     0.500
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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