STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2896TIGRFAM: glycosyltransferase, MGT family; PFAM: protein of unknown function DUF1205; glycosyl transferase family 28; Glycosyltransferase 28 domain; KEGG: ses:SARI_00205 hypothetical protein. (330 aa)    
Predicted Functional Partners:
Amir_2895
PFAM: cytochrome P450; KEGG: CYP55B1; cytochrome P450, nitric oxide reductase.
   
   0.772
Amir_2894
PFAM: cytochrome P450; KEGG: bxe:Bxe_C0945 putative cytochrome P450.
   
   0.573
Amir_2890
KEGG: cell wall protein.
       0.515
Amir_2891
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: swi:Swit_1768 regulatory protein, TetR.
       0.515
Amir_2892
PFAM: protein of unknown function DUF1271; KEGG: bxe:Bxe_C0944 putative ferredoxin.
       0.515
Amir_2893
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: met:M446_4600 cyclic nucleotide-binding protein.
       0.515
Amir_4844
Sterol 3-beta-glucosyltransferase; PFAM: glycosyl transferase family 28; KEGG: afw:Anae109_0485 glycosyl transferase family protein.
  
     0.496
Amir_1564
KEGG: met:M446_2019 hypothetical protein.
  
     0.438
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.