Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Amir_3851 | Amir_3852 | PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1000 putative hydrolase. | KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. | 0.944 |
Amir_3851 | Amir_3853 | PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1000 putative hydrolase. | Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.773 |
Amir_3851 | Amir_3854 | PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1000 putative hydrolase. | KEGG: psb:Psyr_0893 hypothetical protein. | 0.422 |
Amir_3852 | Amir_3851 | KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. | PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1000 putative hydrolase. | 0.944 |
Amir_3852 | Amir_3853 | KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. | Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.883 |
Amir_3852 | Amir_3854 | KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. | KEGG: psb:Psyr_0893 hypothetical protein. | 0.422 |
Amir_3853 | Amir_3851 | Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1000 putative hydrolase. | 0.773 |
Amir_3853 | Amir_3852 | Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. | 0.883 |
Amir_3853 | Amir_3854 | Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | KEGG: psb:Psyr_0893 hypothetical protein. | 0.422 |
Amir_3854 | Amir_3851 | KEGG: psb:Psyr_0893 hypothetical protein. | PFAM: alpha/beta hydrolase fold; KEGG: rle:RL1000 putative hydrolase. | 0.422 |
Amir_3854 | Amir_3852 | KEGG: psb:Psyr_0893 hypothetical protein. | KEGG: rle:RL0999 putative two-component regulator sensor histidine kinase protein; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. | 0.422 |
Amir_3854 | Amir_3853 | KEGG: psb:Psyr_0893 hypothetical protein. | Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: mca:MCA1686 anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.422 |
Amir_3854 | Amir_3855 | KEGG: psb:Psyr_0893 hypothetical protein. | KEGG: nha:Nham_0965 ChrB domain-containing protein. | 0.491 |
Amir_3854 | Amir_3856 | KEGG: psb:Psyr_0893 hypothetical protein. | PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter. | 0.488 |
Amir_3855 | Amir_3854 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | KEGG: psb:Psyr_0893 hypothetical protein. | 0.491 |
Amir_3855 | Amir_3856 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter. | 0.769 |
Amir_3856 | Amir_3854 | PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter. | KEGG: psb:Psyr_0893 hypothetical protein. | 0.488 |
Amir_3856 | Amir_3855 | PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter. | KEGG: nha:Nham_0965 ChrB domain-containing protein. | 0.769 |