STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3855KEGG: nha:Nham_0965 ChrB domain-containing protein. (181 aa)    
Predicted Functional Partners:
Amir_3856
PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter.
       0.769
Amir_3838
PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase.
  
     0.518
Amir_4274
KEGG: aba:Acid345_2268 hypothetical protein.
  
     0.515
Amir_4546
PFAM: integrase family protein; KEGG: aeh:Mlg_1488 tyrosine recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.492
Amir_3854
KEGG: psb:Psyr_0893 hypothetical protein.
       0.491
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
       0.479
Amir_4683
PFAM: regulatory protein TetR; KEGG: cvi:CV_0711 TetR family transcriptional regulator.
  
     0.463
Amir_3836
PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase.
  
     0.425
Amir_4303
KEGG: nmu:Nmul_A2202 hypothetical protein.
  
     0.419
Amir_3837
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein.
  
     0.408
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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