Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Amir_3836 | Amir_3837 | Amir_3836 | Amir_3837 | PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase. | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein. | 0.959 |
Amir_3836 | Amir_3838 | Amir_3836 | Amir_3838 | PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase. | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | 0.960 |
Amir_3836 | Amir_3855 | Amir_3836 | Amir_3855 | PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase. | KEGG: nha:Nham_0965 ChrB domain-containing protein. | 0.425 |
Amir_3837 | Amir_3836 | Amir_3837 | Amir_3836 | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein. | PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase. | 0.959 |
Amir_3837 | Amir_3838 | Amir_3837 | Amir_3838 | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein. | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | 0.990 |
Amir_3837 | Amir_3855 | Amir_3837 | Amir_3855 | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein. | KEGG: nha:Nham_0965 ChrB domain-containing protein. | 0.408 |
Amir_3838 | Amir_3836 | Amir_3838 | Amir_3836 | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase. | 0.960 |
Amir_3838 | Amir_3837 | Amir_3838 | Amir_3837 | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein. | 0.990 |
Amir_3838 | Amir_3855 | Amir_3838 | Amir_3855 | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | KEGG: nha:Nham_0965 ChrB domain-containing protein. | 0.518 |
Amir_3838 | Amir_4683 | Amir_3838 | Amir_4683 | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | PFAM: regulatory protein TetR; KEGG: cvi:CV_0711 TetR family transcriptional regulator. | 0.434 |
Amir_3854 | Amir_3855 | Amir_3854 | Amir_3855 | KEGG: psb:Psyr_0893 hypothetical protein. | KEGG: nha:Nham_0965 ChrB domain-containing protein. | 0.491 |
Amir_3854 | Amir_3856 | Amir_3854 | Amir_3856 | KEGG: psb:Psyr_0893 hypothetical protein. | PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter. | 0.488 |
Amir_3855 | Amir_3836 | Amir_3855 | Amir_3836 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase. | 0.425 |
Amir_3855 | Amir_3837 | Amir_3855 | Amir_3837 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_2233 xylose isomerase domain- containing protein. | 0.408 |
Amir_3855 | Amir_3838 | Amir_3855 | Amir_3838 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase. | 0.518 |
Amir_3855 | Amir_3854 | Amir_3855 | Amir_3854 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | KEGG: psb:Psyr_0893 hypothetical protein. | 0.491 |
Amir_3855 | Amir_3856 | Amir_3855 | Amir_3856 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | PFAM: major facilitator superfamily MFS_1; KEGG: afw:Anae109_0137 major facilitator transporter. | 0.769 |
Amir_3855 | Amir_4274 | Amir_3855 | Amir_4274 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | KEGG: aba:Acid345_2268 hypothetical protein. | 0.515 |
Amir_3855 | Amir_4303 | Amir_3855 | Amir_4303 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | KEGG: nmu:Nmul_A2202 hypothetical protein. | 0.419 |
Amir_3855 | Amir_4546 | Amir_3855 | Amir_4546 | KEGG: nha:Nham_0965 ChrB domain-containing protein. | PFAM: integrase family protein; KEGG: aeh:Mlg_1488 tyrosine recombinase XerD; Belongs to the 'phage' integrase family. | 0.492 |
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