Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Amir_0140 | Amir_3858 | PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_5049 hypothetical protein. | KEGG: rle:RL3033 hypothetical protein. | 0.402 |
Amir_2112 | Amir_3858 | Hypothetical protein. | KEGG: rle:RL3033 hypothetical protein. | 0.486 |
Amir_3858 | Amir_0140 | KEGG: rle:RL3033 hypothetical protein. | PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_5049 hypothetical protein. | 0.402 |
Amir_3858 | Amir_2112 | KEGG: rle:RL3033 hypothetical protein. | Hypothetical protein. | 0.486 |
Amir_3858 | Amir_3859 | KEGG: rle:RL3033 hypothetical protein. | Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_1735 SARP family transcriptional regulator. | 0.687 |
Amir_3858 | Amir_4394 | KEGG: rle:RL3033 hypothetical protein. | Hypothetical protein. | 0.467 |
Amir_3858 | Amir_4665 | KEGG: rle:RL3033 hypothetical protein. | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1526 hypothetical protein. | 0.487 |
Amir_3859 | Amir_3858 | Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_1735 SARP family transcriptional regulator. | KEGG: rle:RL3033 hypothetical protein. | 0.687 |
Amir_4394 | Amir_3858 | Hypothetical protein. | KEGG: rle:RL3033 hypothetical protein. | 0.467 |
Amir_4394 | Amir_4665 | Hypothetical protein. | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1526 hypothetical protein. | 0.426 |
Amir_4665 | Amir_3858 | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1526 hypothetical protein. | KEGG: rle:RL3033 hypothetical protein. | 0.487 |
Amir_4665 | Amir_4394 | PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1526 hypothetical protein. | Hypothetical protein. | 0.426 |