STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3858KEGG: rle:RL3033 hypothetical protein. (151 aa)    
Predicted Functional Partners:
Amir_3859
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: afw:Anae109_1735 SARP family transcriptional regulator.
 
     0.687
Amir_4665
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: rlt:Rleg2_1526 hypothetical protein.
  
     0.487
Amir_2112
Hypothetical protein.
 
     0.486
Amir_4394
Hypothetical protein.
 
     0.467
Amir_0140
PFAM: GCN5-related N-acetyltransferase; KEGG: atc:AGR_C_5049 hypothetical protein.
  
     0.402
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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