STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3866Hypothetical protein; KEGG: rsh:Rsph17029_3715 nitroreductase. (518 aa)    
Predicted Functional Partners:
Amir_3864
PFAM: protein of unknown function DUF181; KEGG: bca:BCE_1377 hypothetical protein.
 
  
 0.927
Amir_3862
Hypothetical protein.
  
    0.811
Amir_3863
Hypothetical protein; KEGG: afw:Anae109_2123 heat repeat-containing PBS lyase.
       0.805
Amir_3865
Hypothetical protein.
       0.794
Amir_3861
PFAM: Lantibiotic dehydratase domain protein; KEGG: scl:sce9070 hypothetical protein.
  
    0.789
Amir_0691
PFAM: nitroreductase; KEGG: bcz:pE33L466_0413 NADH oxidase.
  
     0.753
Amir_3860
Hypothetical protein.
       0.564
Amir_3386
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Citrate transporter; KEGG: azc:AZC_1182 H+/citrate symporter.
  
     0.481
Amir_1939
PFAM: ABC-2 type transporter; KEGG: bca:BCE_5484 ABC transporter, permease protein, putative.
 
    0.431
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.