STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3869KEGG: nar:Saro_1805 hypothetical protein. (337 aa)    
Predicted Functional Partners:
Amir_2483
Hypothetical protein; KEGG: similar to mucin 2; K10955 intestinal mucin- 2.
  
 
   0.486
Amir_3870
Hypothetical protein.
       0.485
Amir_4122
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: azc:AZC_2089 hypothetical protein.
  
     0.481
Amir_2547
KEGG: hypothetical protein.
  
     0.454
Amir_2701
Hypothetical protein.
  
     0.445
Amir_2931
PFAM: WD40 domain protein beta Propeller; KEGG: ade:Adeh_2230 hypothetical protein.
  
     0.426
Amir_4993
Hypothetical protein.
  
     0.422
Amir_4155
PFAM: lipolytic protein G-D-S-L family; KEGG: bvi:Bcep1808_2033 allergen V5/TPX-1 family protein.
  
     0.403
Amir_4601
KEGG: hypothetical protein.
  
   
 0.400
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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