Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Amir_3709 | Amir_3872 | PFAM: Luciferase-like monooxygenase; KEGG: mex:Mext_1273 putative dehydrogenase protein. | KEGG: met:M446_2237 hypothetical protein. | 0.466 |
Amir_3871 | Amir_3872 | Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A5589 DNA-binding response regulator YycF. | KEGG: met:M446_2237 hypothetical protein. | 0.529 |
Amir_3871 | Amir_5091 | Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A5589 DNA-binding response regulator YycF. | KEGG: ank:AnaeK_4253 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein. | 0.850 |
Amir_3872 | Amir_3709 | KEGG: met:M446_2237 hypothetical protein. | PFAM: Luciferase-like monooxygenase; KEGG: mex:Mext_1273 putative dehydrogenase protein. | 0.466 |
Amir_3872 | Amir_3871 | KEGG: met:M446_2237 hypothetical protein. | Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A5589 DNA-binding response regulator YycF. | 0.529 |
Amir_3872 | Amir_3972 | KEGG: met:M446_2237 hypothetical protein. | PFAM: monooxygenase FAD-binding; KEGG: pde:Pden_1503 hypothetical protein. | 0.476 |
Amir_3872 | Amir_5091 | KEGG: met:M446_2237 hypothetical protein. | KEGG: ank:AnaeK_4253 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein. | 0.474 |
Amir_3872 | Amir_6010 | KEGG: met:M446_2237 hypothetical protein. | PFAM: monooxygenase FAD-binding; KEGG: mrd:Mrad2831_2174 monooxygenase FAD-binding. | 0.404 |
Amir_3972 | Amir_3872 | PFAM: monooxygenase FAD-binding; KEGG: pde:Pden_1503 hypothetical protein. | KEGG: met:M446_2237 hypothetical protein. | 0.476 |
Amir_5091 | Amir_3871 | KEGG: ank:AnaeK_4253 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein. | Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcb:BCB4264_A5589 DNA-binding response regulator YycF. | 0.850 |
Amir_5091 | Amir_3872 | KEGG: ank:AnaeK_4253 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein. | KEGG: met:M446_2237 hypothetical protein. | 0.474 |
Amir_6010 | Amir_3872 | PFAM: monooxygenase FAD-binding; KEGG: mrd:Mrad2831_2174 monooxygenase FAD-binding. | KEGG: met:M446_2237 hypothetical protein. | 0.404 |