STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3956KEGG: hypothetical protein; K03497 chromosome partitioning protein, ParB family. (272 aa)    
Predicted Functional Partners:
Amir_6022
KEGG: mucin-associated surface protein (MASP).
  
     0.770
Amir_0046
Nuclease (RecB family)-like protein.
  
     0.767
Amir_7075
KEGG: hypothetical protein.
  
     0.766
Amir_6537
Hypothetical protein; KEGG: similar to mucin 7, salivary.
  
     0.762
Amir_6445
Hypothetical protein.
  
     0.760
Amir_1512
Hypothetical protein.
  
     0.759
Amir_5899
Hypothetical protein.
  
     0.759
Amir_0728
Hypothetical protein; KEGG: GM22731 gene product from transcript GM22731- RA.
  
     0.757
Amir_1029
Hypothetical protein.
  
     0.752
Amir_6909
Hypothetical protein.
  
     0.732
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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