STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4018KEGG: jan:Jann_0393 NAD-dependent epimerase/dehydratase. (213 aa)    
Predicted Functional Partners:
Amir_1259
PFAM: permease; KEGG: bcy:Bcer98_1540 permease.
   
    0.586
Amir_1349
PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2335 domain of unknown function DUF1731.
   
    0.430
Amir_5110
PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.430
Amir_4711
KEGG: rme:Rmet_4641 ATP-dependent endonuclease of the OLD family-like protein.
   
    0.429
Amir_5288
PFAM: SMC domain protein; KEGG: ecw:EcE24377A_3363 hypothetical protein.
   
    0.429
arcA
KEGG: ses:SARI_03184 arginine deiminase; TIGRFAM: arginine deiminase; PFAM: amidinotransferase.
   
    0.426
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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