STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4031Glucan endo-1,3-beta-D-glucosidase; KEGG: hypothetical protein; PFAM: Ricin B lectin; SMART: Ricin B lectin. (531 aa)    
Predicted Functional Partners:
Amir_4966
Alpha-N-arabinofuranosidase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin.
 
   0.681
Amir_6206
PFAM: glycoside hydrolase family 18; cellulose- binding family II; SMART: chitinase II; cellulose-binding family II; KEGG: cja:CJA_2611 endo-chitinase, putative, chi18D; Belongs to the glycosyl hydrolase 18 family.
   
 0.620
Amir_1077
PFAM: Carbohydrate binding family 6; glycoside hydrolase family 16; SMART: cellulose binding type IV; KEGG: hypothetical protein.
   
 0.578
Amir_4828
PFAM: Ricin B lectin; SMART: Ricin B lectin; KEGG: bha:BH0494 exopolygalacturonate lyase.
 
   
 0.549
Amir_3301
PFAM: glycoside hydrolase family 62; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: glycosyl hydrolase family 62 protein.
 
 
   0.539
Amir_3496
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: hha:Hhal_0914 putative transcriptional regulator, MerR family.
  
     0.504
Amir_3303
PFAM: glycoside hydrolase family 62; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hypothetical protein.
 
 
   0.490
Amir_6238
PFAM: cellulose-binding family II; Fibronectin type III domain protein; SMART: cellulose-binding family II; Fibronectin type III domain protein; KEGG: azc:AZC_2901 type III fibronectin.
     0.470
Amir_1892
PFAM: OsmC family protein; KEGG: bch:Bcen2424_5605 OsmC family protein.
  
     0.446
Amir_1244
PFAM: lipolytic protein G-D-S-L family; KEGG: scl:sce5221 hypothetical protein.
  
     0.444
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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