STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4080PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KR domain protein; 3-beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; KEGG: ade:Adeh_0777 NAD-dependent epimerase/dehydratase. (336 aa)    
Predicted Functional Partners:
Amir_4079
KEGG: cbg:CbuG_0320 hypothetical membrane spanning protein.
       0.768
Amir_4083
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA1238 polyketide synthase.
 
 
 0.684
Amir_4082
KEGG: pau:PA14_51770 hypothetical protein.
 
 
   0.680
Amir_4081
PFAM: flavin reductase domain protein FMN-binding; KEGG: pde:Pden_2689 flavin reductase domain protein, FMN-binding.
  
    0.596
Amir_4078
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
 
     0.580
Amir_1283
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: hypothetical protein.
  
     0.525
Amir_3553
PFAM: glycosyl transferase family 2; KEGG: rru:Rru_A2348 glycosyl transferase.
 
  
 0.513
rpsS
Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.487
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
  0.482
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
  0.479
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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