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Amir_4198 protein (Actinosynnema mirum) - STRING interaction network
"Amir_4198" - Pectinesterase in Actinosynnema mirum
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4198Pectinesterase; KEGG- xca-xccb100_0130 exported pectinesterase; PFAM- Pectinesterase; Ricin B lectin; SMART- Ricin B lectin (487 aa)    
Predicted Functional Partners:
Amir_4664
PFAM- lipolytic protein G-D-S-L family; KEGG- bsu-BSU07020 hypothetical protein (285 aa)
          0.888
Amir_4682
PFAM- cellulose-binding family II; SMART- cellulose-binding family II; KEGG- ccs-CCNA_03254 pectate lyase (593 aa)
     
  0.850
Amir_4199
PFAM- Ricin B lectin; Pectate lyase/Amb allergen; SMART- Ricin B lectin; Parallel beta-helix repeat; Pectate lyase/Amb allergen; KEGG- bha-BH0698 pectate lyase (474 aa)
 
     
0.820
Amir_2836
PFAM- protein of unknown function DUF1680; KEGG- hypothetical protein (614 aa)
   
          0.712
Amir_1868
PFAM- cellulose-binding family II; SMART- cellulose-binding family II; KEGG- cja-CJA_3559 rhamnogalacturonan lyase, rgl11A (744 aa)
 
     
  0.708
Amir_1848
PFAM- Pectate lyase/Amb allergen; SMART- Pectate lyase/Amb allergen; Parallel beta- helix repeat; KEGG- pectate lyase (317 aa)
     
  0.687
Amir_1859
PFAM- protein of unknown function DUF1680; SMART- LamG domain protein jellyroll fold domain protein; KEGG- hypothetical protein (736 aa)
   
          0.658
Amir_4712
PFAM- protein of unknown function DUF1680; KEGG- hypothetical protein (881 aa)
   
          0.653
Amir_2837
PFAM- glycoside hydrolase family 43; KEGG- scl-sce4598 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family (348 aa)
     
  0.638
Amir_3750
Arabinan endo-1,5-alpha-L-arabinosidase; PFAM- glycoside hydrolase family 43; KEGG- hypothetical protein (319 aa)
 
     
  0.615
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum, Actinosynnema mirum DSM 43827, Actinosynnema mirum DSM43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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