STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4203PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: bsu:BSU10500 hypothetical protein. (487 aa)    
Predicted Functional Partners:
Amir_4202
PFAM: regulatory protein TetR; KEGG: sus:Acid_4679 TetR family transcriptional regulator.
       0.562
Amir_2036
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mex:Mext_0724 monooxygenase FAD-binding.
  
     0.490
Amir_4602
PFAM: monooxygenase FAD-binding; KEGG: pag:PLES_17361 putative FAD-dependent monooxygenase.
  
     0.484
Amir_4971
PFAM: monooxygenase FAD-binding; KEGG: bur:Bcep18194_A4891 monooxygenase, FAD- binding.
  
     0.474
Amir_4201
KEGG: mrd:Mrad2831_1538 precorrin-6A synthase (deacetylating); TIGRFAM: precorrin-6A synthase (deacetylating); PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
       0.465
Amir_4005
PFAM: monooxygenase FAD-binding; KEGG: msl:Msil_0387 monooxygenase FAD-binding.
  
     0.424
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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