STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4550Methyl-accepting chemotaxis sensory transducer; PFAM: protein of unknown function DUF312; KEGG: SNF2 superfamily protein. (1040 aa)    
Predicted Functional Partners:
Amir_4549
PFAM: peptidase S1 and S6 chymotrypsin/Hap; FG-GAP repeat protein; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: acp:A2cp1_3748 hypothetical protein.
 
     0.940
Amir_3882
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: peptidase S1 and S6 chymotrypsin/Hap; KEGG: hypothetical protein.
  
     0.774
Amir_0290
Hypothetical protein; KEGG: swi:Swit_0780 branched-chain alpha-keto acid dehydrogenase E2 component.
  
     0.615
Amir_1320
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_c3203 ABC transporter, HlyB/MsbA family.
  
     0.569
Amir_5145
KEGG: cti:RALTA_B1157 putative diguanylate cyclase (GGDEF domain) and C-di-GMP phosphodiesterase (EAL domain)); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein.
  
   
 0.564
Amir_0559
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_3854 tetratricopeptide TPR_2 repeat protein.
  
    0.559
Amir_4117
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
     0.553
Amir_4083
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA1238 polyketide synthase.
  
     0.544
Amir_1319
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pzu:PHZ_c3203 ABC transporter, HlyB/MsbA family.
 
     0.535
Amir_4118
Hypothetical protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
     0.531
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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