STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4845PFAM: cytochrome P450; KEGG: scl:sce8913 cytochrome P450 CYP109C2. (405 aa)    
Predicted Functional Partners:
Amir_3892
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; condensation domain protein; KR domain protein; Thioesterase; phosphopantetheine-binding; KEGG: pen:PSEEN2718 polyketide synthase (terminal component).
  
 0.947
Amir_4604
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; condensation domain protein; Acyl transferase; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; Thioesterase; phosphopantetheine-binding; KEGG: pae:PA3327 non-ribosomal peptide synthetase.
  
 
 0.926
Amir_3602
Cyclic nucleotide-binding protein; TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Methyltransferase type 11; Methyltransferase type 12; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: smd:Smed_6472 amino acid adenylation domain.
  
 
 0.913
Amir_2445
Cytochrome P450-like protein; KEGG: scl:sce8913 cytochrome P450 CYP109C2.
  
     0.774
Amir_4834
PFAM: cytochrome P450; KEGG: mxa:MXAN_2304 cytochrome P450 family protein.
  
     0.654
Amir_4498
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3618 non-ribosomal peptide synthetase.
  
 
 0.644
Amir_4841
Sterol 3-beta-glucosyltransferase; PFAM: glycosyl transferase family 28; KEGG: afw:Anae109_0485 glycosyl transferase family protein.
   
   0.636
Amir_4844
Sterol 3-beta-glucosyltransferase; PFAM: glycosyl transferase family 28; KEGG: afw:Anae109_0485 glycosyl transferase family protein.
   
   0.636
Amir_3577
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_3618 non-ribosomal peptide synthetase.
  
 
 0.627
Amir_3891
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; phosphopantetheine-binding; condensation domain protein; KEGG: pen:PSEEN2717 non-ribosomal peptide synthetase.
  
 
 0.627
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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