STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5133Transcriptional regulator. (69 aa)    
Predicted Functional Partners:
Amir_6524
PFAM: sporulation and cell division protein SsgA.
  
     0.710
Amir_2015
PFAM: sporulation and cell division protein SsgA.
  
     0.688
Amir_5247
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pzu:PHZ_c2067 transcriptional regulator, Cro/CI family.
  
     0.671
Amir_6825
KEGG: mxa:MXAN_7418 hypothetical protein.
  
     0.638
Amir_5134
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce6041 ABC transporter, ATP-binding protein.
  
    0.608
Amir_6042
PFAM: Methionine synthase vitamin-B12 independent; KEGG: dal:Dalk_5194 hypothetical protein.
  
     0.595
Amir_5132
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dal:Dalk_3354 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.588
Amir_0227
PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S15; KEGG: pzu:PHZ_c2763 dipeptidyl aminopeptidase/acylaminoacyl-peptidase.
  
     0.583
Amir_5362
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bsu:BSU04720 serine-protein kinase RsbW.
  
     0.582
Amir_6829
KEGG: mxa:MXAN_0146 hypothetical protein.
  
     0.582
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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