STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5149TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: bsu:BSU32680 hypothetical protein. (147 aa)    
Predicted Functional Partners:
Amir_0593
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: afw:Anae109_1098 aminotransferase class V.
  
 0.997
Amir_6046
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cysteine desulfurase NifS; K04487 cysteine desulfurase.
  
 0.997
Amir_5148
PFAM: protein of unknown function DUF59; KEGG: eli:ELI_12745 metal-sulfur cluster biosynthetic enzyme.
 
    0.996
Amir_5150
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.996
Amir_5151
FeS assembly ATPase SufC; KEGG: bat:BAS4851 ABC transporter, ATP-binding protein; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.996
Amir_5153
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: mxa:MXAN_1155 FeS assembly protein SufD.
 
  
 0.981
Amir_5154
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: bcz:BCZK4703 iron-regulated ABC transporter.
 
  
 0.978
Amir_5748
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce1210 hypothetical protein.
 
 
 0.953
Amir_0136
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; KEGG: mlo:mlr0102 aminotransferase.
 
 
 0.930
Amir_4075
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: spe:Spro_3869 cysteine desulfurase family protein.
 
 
 0.926
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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