STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5872KEGG: tgr:Tgr7_3169 streptogramin A acetyl transferase. (221 aa)    
Predicted Functional Partners:
Amir_5871
PFAM: alpha/beta hydrolase fold; KEGG: abb:ABBFA_001367 alpha/beta hydrolase fold family protein.
       0.773
Amir_3624
KEGG: bac:BamMC406_2852 hexapaptide repeat- containing transferase.
  
     0.751
Amir_6061
Acetyltransferase (isoleucine patch superfamily)-like protein; KEGG: bpy:Bphyt_6269 putative acetyltransferase.
  
     0.717
Amir_0133
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbc:CbuK_1550 polysaccharide export ATP- binding protein.
    
 0.561
Amir_5870
PFAM: peptidase M48 Ste24p; KEGG: hypothetical protein.
       0.551
Amir_3789
KEGG: bbr:BB0423 putative hydrolase.
     
 0.546
Amir_3761
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dar:Daro_0364 ABC transporter.
 
      0.490
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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