STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6058PFAM: glycosyl transferase group 1; KEGG: bha:BH1415 hypothetical protein. (417 aa)    
Predicted Functional Partners:
Amir_6057
PFAM: glycoside hydrolase family 57; KEGG: scl:sce1626 hypothetical protein; Belongs to the glycosyl hydrolase 57 family.
 
 0.998
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.954
glgE
Alpha amylase catalytic region; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
    
 0.916
Amir_0628
PFAM: Nucleotidyl transferase; KEGG: mag:amb4451 UDP-glucose pyrophosphorylase.
    
 0.911
Amir_5116
4-alpha-glucanotransferase; KEGG: bpt:Bpet2366 hypothetical protein; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77.
 
   
 0.906
Amir_0371
PFAM: glycosyl transferase family 20; KEGG: scl:sce0488 Alpha,alpha-trehalose-phosphate synthase (UDP-forming).
    
 0.905
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
    
 0.821
Amir_6056
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sus:Acid_7436 methyltransferase type 11.
 
   
 0.817
Amir_1200
Hypothetical protein.
  
     0.739
Amir_1384
Hypothetical protein.
  
    0.739
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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