STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6377RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: MUC17; mucin 17, cell surface associated; Belongs to the sigma-70 factor family. ECF subfamily. (892 aa)    
Predicted Functional Partners:
Amir_6376
KEGG: hypothetical protein.
 
     0.860
Amir_6378
PFAM: GtrA family protein; KEGG: GtrA family protein.
 
     0.588
Amir_6737
KEGG: ank:AnaeK_2468 hypothetical protein.
 
 
   0.584
Amir_6942
Hypothetical protein.
  
     0.531
Amir_6330
Glycosyltransferase-like protein; KEGG: GF17743 gene product from transcript GF17743- RA.
  
     0.483
Amir_7004
PFAM: GTP-binding protein HSR1-related; KEGG: mca:MCA1193 hypothetical protein.
  
     0.470
Amir_1379
PFAM: protein of unknown function DUF901; KEGG: ank:AnaeK_0136 methyltransferase type 11.
 
    0.461
Amir_0796
Putative transmembrane anti-sigma factor; KEGG: similar to sperm associated antigen 8 isoform 2.
  
   0.435
Amir_5508
PFAM: RES domain protein; KEGG: rsh:Rsph17029_3025 hypothetical protein.
  
     0.415
Amir_0873
KEGG: bbt:BBta_2034 putative SURF1 family protein.
  
     0.410
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.