Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Cfla_0605 | Cfla_0894 | KEGG: hypothetical protein. | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | 0.528 |
Cfla_0605 | Cfla_0953 | KEGG: hypothetical protein. | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | 0.638 |
Cfla_0605 | Cfla_0954 | KEGG: hypothetical protein. | PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein. | 0.640 |
Cfla_0605 | Cfla_0957 | KEGG: hypothetical protein. | PFAM: protein of unknown function DUF214; KEGG: protein of unknown function DUF214. | 0.615 |
Cfla_0605 | Cfla_0958 | KEGG: hypothetical protein. | PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_4859 hypothetical protein. | 0.735 |
Cfla_0605 | Cfla_1781 | KEGG: hypothetical protein. | PFAM: sporulation and cell division protein SsgA; KEGG: sgr:SGR_5997 putative SsgB protein. | 0.592 |
Cfla_0605 | Cfla_2827 | KEGG: hypothetical protein. | Hypothetical protein; KEGG: hut:Huta_1312 peptidase S26B, signal peptidase. | 0.743 |
Cfla_0605 | Cfla_3153 | KEGG: hypothetical protein. | PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: nml:Namu_1835 biotin/lipoyl attachment domain- containing protein. | 0.512 |
Cfla_0894 | Cfla_0605 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | KEGG: hypothetical protein. | 0.528 |
Cfla_0894 | Cfla_0953 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | 0.663 |
Cfla_0894 | Cfla_0954 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein. | 0.565 |
Cfla_0894 | Cfla_0957 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | PFAM: protein of unknown function DUF214; KEGG: protein of unknown function DUF214. | 0.644 |
Cfla_0894 | Cfla_0958 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | PFAM: protein of unknown function DUF214; KEGG: sgr:SGR_4859 hypothetical protein. | 0.643 |
Cfla_0894 | Cfla_1781 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | PFAM: sporulation and cell division protein SsgA; KEGG: sgr:SGR_5997 putative SsgB protein. | 0.419 |
Cfla_0894 | Cfla_2827 | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | Hypothetical protein; KEGG: hut:Huta_1312 peptidase S26B, signal peptidase. | 0.457 |
Cfla_0953 | Cfla_0605 | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | KEGG: hypothetical protein. | 0.638 |
Cfla_0953 | Cfla_0894 | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | KEGG: bcv:Bcav_1000 parallel beta-helix repeat protein. | 0.663 |
Cfla_0953 | Cfla_0954 | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | PFAM: protein of unknown function DUF214; KEGG: sco:SCO2672 hypothetical protein. | 0.954 |
Cfla_0953 | Cfla_0955 | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | KEGG: sgr:SGR_1662 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. | 0.857 |
Cfla_0953 | Cfla_0956 | PFAM: protein of unknown function DUF214; KEGG: bcv:Bcav_1557 protein of unknown function DUF214. | KEGG: bcv:Bcav_1556 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. | 0.927 |
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