STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_2303Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ami:Amir_3042 monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; SPTR: C1YUW1 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component. (340 aa)    
Predicted Functional Partners:
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.995
Ndas_2301
COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR013459; KEGG: ami:Amir_3044 rhamnose ABC transporter, periplasmic rhamnose-binding protein; SPTR: C1YUW3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; TIGRFAM: rhamnose ABC transporter, rhamnose-binding protein.
 0.993
Ndas_2302
Inner-membrane translocator; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: ami:Amir_3043 monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; SPTR: C1YUW2 Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component.
 
  
 
0.932
Ndas_0757
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003439:IPR003593; KEGG: gtn:GTNG_1800 L-arabinose transport, ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1YN97 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
 
 0.907
Ndas_1374
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: msm:MSMEG_4000 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1YRI5 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
 
 0.907
Ndas_4055
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR017871:IPR003593:IPR003439; KEGG: svi:Svir_12280 monosaccharide ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1YSD4 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
 
 0.907
Ndas_2852
ABC transporter related protein; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: tfu:Tfu_1921 ABC-type sugar transport system ATPase component; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: C1YJZ4 Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter.
 
 0.896
Ndas_1373
Periplasmic binding protein/LacI transcriptional regulator; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: msm:MSMEG_3999 ABC transporter periplasmic-binding protein YphF; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2 family; PFAM: family.
 
 
 0.885
Ndas_2853
COGs: COG4213 ABC-type xylose transport system periplasmic component; KEGG: tfu:Tfu_1922 solute-binding protein; SPTR: C1YJZ3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
   
 0.630
Ndas_4058
Monosaccharide-binding protein; COGs: COG1879 ABC-type sugar transport system periplasmic component; KEGG: svi:Svir_12320 monosaccharide-binding protein; SPTR: C1YSD1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
 
 0.629
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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