STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_3698Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterPro IPR006674; KEGG: tfu:Tfu_0551 putative lipoprotein; PFAM: metal-dependent phosphohydrolase HD sub domain; SPTR: C1YU37 HD-GYP domain-containing protein; PFAM: HD domain. (445 aa)    
Predicted Functional Partners:
Ndas_3699
Metal dependent phosphohydrolase; COGs: COG2206 HD-GYP domain; InterPro IPR003607:IPR006675:IPR006674; KEGG: tfu:Tfu_0550 metal-dependent phosphohydrolase, HD region; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: C1YU36 Uncharacterized domain HDIG-containing protein; TIGRFAM: metal dependent phophohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
0.888
Ndas_5202
GAF sensor hybrid histidine kinase; COGs: COG0642 Signal transduction histidine kinase; InterProIPR009082:IPR003660:IPR001789:IPR003594:IPR 003661:IPR005467:IPR011006:IPR003018:IPR004358; KEGG: tfu:Tfu_0286 GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase HAMP region domain protein; histidine kinase A domain protein; GAF domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; histidine kinase HAMP region domain protein; GAF domain pro [...]
  
 
 0.832
Ndas_0170
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); COGs: COG5001 signal transduction protein containing a membrane domain an EAL and a GGDEF domain; InterProIPR000160:IPR000014:IPR001633:IPR001610:IPR 013655; KEGG: tfu:Tfu_0610 diguanylate cyclase/phosphodiesterase; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-3 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; SPTR: C1YHV9 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein; TIGRFAM: diguanylate [...]
 
 
 0.796
Ndas_4611
Protein of unknown function DUF88; InterPro IPR002790; KEGG: tfu:Tfu_3005 hypothetical protein; PFAM: protein of unknown function DUF88; SPTR: C1YGL0 Uncharacterized conserved protein; PFAM: Protein of unknown function DUF88.
  
     0.663
Ndas_0080
KEGG: sro:Sros_8571 hypothetical protein; SPTR: C1YHY6 Putative uncharacterized protein.
  
     0.653
Ndas_2882
KEGG: tfu:Tfu_1937 hypothetical protein; SPTR: C1YJW4 Putative uncharacterized protein.
  
     0.651
Ndas_5006
KEGG: tfu:Tfu_2706 hypothetical protein; SPTR: C1YIF8 Putative uncharacterized protein.
  
     0.650
Ndas_3799
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR016040:IPR001509:IPR002347; KEGG: tfu:Tfu_0537 hypothetical protein; PFAM: NAD-dependent epimerase/dehydratase; SPTR: C1YL54 Nucleoside-diphosphate-sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family.
  
     0.623
Ndas_4368
Bifunctional DNA primase/polymerase; InterPro IPR015330; KEGG: tfu:Tfu_2729 hypothetical protein; PFAM: Bifunctional DNA primase/polymerase; SPTR: C1YGP2 Bifunctional DNA primase/polymerase famiily protein; PFAM: Bifunctional DNA primase/polymerase, N-terminal.
  
     0.611
Ndas_0136
KEGG: tfu:Tfu_0475 hypothetical protein; SPTR: C1YHJ6 Putative uncharacterized protein.
  
     0.597
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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