STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ndas_4215Drug resistance transporter, EmrB/QacA subfamily; COGs: COG2271 Sugar phosphate permease; InterPro IPR004638:IPR011701:IPR016196; KEGG: sco:SCO2373 tetracenomycin C efflux protein; PFAM: major facilitator superfamily MFS_1; SPTR: C1YGZ7 Drug resistance transporter, EmrB/QacA subfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily. (529 aa)    
Predicted Functional Partners:
Ndas_4216
Transcriptional regulator, TetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647:IPR012287:IPR009057; KEGG: sco:SCO2374 transcriptional regulator; PFAM: regulatory protein TetR; SPTR: C1YGZ6 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
       0.522
Ndas_4471
InterPro IPR011701:IPR016196; KEGG: mva:Mvan_5900 major facilitator superfamily transporter; PFAM: major facilitator superfamily MFS_1; SPTR: C1YG97 Arabinose efflux permease family protein; PFAM: PUCC protein; Major Facilitator Superfamily.
  
     0.459
Ndas_4214
Short-chain dehydrogenase/reductase SDR; COGs: COG1028 Dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase); InterPro IPR016040:IPR002198:IPR002347; KEGG: sro:Sros_6803 hypothetical protein; PFAM: short-chain dehydrogenase/reductase SDR; SPTR: C1YGZ8 Putative uncharacterized protein; PFAM: short chain dehydrogenase.
  
    0.409
Your Current Organism:
Nocardiopsis dassonvillei
NCBI taxonomy Id: 446468
Other names: N. dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei str. DSM 43111, Nocardiopsis dassonvillei subsp. dassonvillei strain DSM 43111
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