STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0215PFAM: Dicarboxylate carrier MatC domain protein; Citrate transporter; KEGG: xac:XAC0567 dicarboxylate carrier protein. (415 aa)    
Predicted Functional Partners:
Snas_0213
PFAM: carboxyl transferase; acetyl-CoA carboxylase alpha subunit; KEGG: acetyl-coA carboxylase; K01959 pyruvate carboxylase subunit A.
 
   
 0.904
Snas_0216
PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dvm:DvMF_1205 GntR domain protein.
 
    0.813
Snas_0214
PFAM: AMP-dependent synthetase and ligase; KEGG: mxa:MXAN_7148 putative long-chain fatty acid-- CoA ligase.
  
  
 0.721
Snas_1622
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xau:Xaut_1536 TRAP C4-dicarboxylate transport system permease DctM subunit.
  
   
 0.617
Snas_0211
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: scl:sce2341 hypothetical protein.
       0.611
Snas_0212
PFAM: regulatory protein ArsR; KEGG: scl:sce2340 ArsR family transcriptional regulator.
       0.611
Snas_0210
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: mlo:mlr1136 alcohol dehydrogenase.
   
   0.606
Snas_1550
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Na+/H+ antiporter NhaC; KEGG: bpt:Bpet0039 TRAP transporter, 4TM/12TM fusion protein.
  
   
 0.506
Snas_6383
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.438
Snas_0217
PFAM: Lanthionine synthetase C family protein; KEGG: mxa:MXAN_6388 lanthionine synthetase C family protein.
       0.425
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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