STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1050Beta-galactosidase; PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: hypothetical protein LOC548712; K01190 beta- galactosidase. (580 aa)    
Predicted Functional Partners:
Snas_0051
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: esa:ESA_03417 hypothetical protein.
 
  
  0.916
Snas_2736
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: esa:ESA_03417 hypothetical protein.
 
  
  0.916
Snas_0304
PFAM: glycoside hydrolase clan GH-D; KEGG: aha:AHA_1897 alpha-galactosidase.
    
 0.911
Snas_1019
PFAM: Aldose 1-epimerase; KEGG: eum:ECUMN_4406 putative aldose-1-epimerase.
  
 
 0.907
Snas_2997
PFAM: Aldose 1-epimerase; KEGG: sed:SeD_A4408 aldose-1-epimerase family protein.
  
 
 0.907
Snas_3011
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.907
Snas_1049
Hypothetical protein; KEGG: GA21679 gene product from transcript GA21679- RA.
       0.658
carB
TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: gur:Gura_1864 carbamoyl-phosphate synthase, large subunit; Belongs to the CarB family.
 
      0.649
Snas_1131
KEGG: dac:Daci_2133 hypothetical protein.
  
 0.620
Snas_5835
Exo-alpha-sialidase; PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: pha:PSHAb0159 putative sialidase.
  
 0.620
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.