STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1578Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: met:M446_0639 LysR family transcriptional regulator. (298 aa)    
Predicted Functional Partners:
Snas_1579
PFAM: histidine triad (HIT) protein; KEGG: rle:pRL120657 HIT motif-containing protein.
       0.773
Snas_1577
PFAM: ThiJ/PfpI domain protein; KEGG: hypothetical protein.
 
     0.679
Snas_5933
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: abc:ACICU_00416 DNA-binding transcriptional regulator HcaR.
  
     0.582
Snas_2880
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bid:Bind_2980 LysR family transcriptional regulator.
  
     0.575
Snas_1988
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: aav:Aave_0303 LysR family transcriptional regulator.
  
     0.573
Snas_1576
PFAM: dienelactone hydrolase; KEGG: bur:Bcep18194_A3379 carboxymethylenebutenolidase.
       0.542
Snas_3497
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: smd:Smed_2097 LysR family transcriptional regulator.
  
     0.527
Snas_2989
PFAM: regulatory protein LysR; KEGG: mno:Mnod_3117 transcriptional regulator, LysR family.
  
     0.525
Snas_4828
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbt:BBta_2695 LysR family transcriptional regulator.
  
     0.513
Snas_3940
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: ank:AnaeK_1662 transcriptional regulator, LysR family.
  
     0.512
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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