STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3718KEGG: scl:sce6783 hypothetical protein. (260 aa)    
Predicted Functional Partners:
Snas_3717
Transcriptional regulator, MarR family with acetyltransferase activity; PFAM: GCN5-related N-acetyltransferase; regulatory protein MarR; SMART: regulatory protein MarR; KEGG: smt:Smal_1052 transcriptional regulator, MarR family with acetyltransferase activity.
       0.528
Snas_2879
KEGG: rec:RHECIAT_CH0001164 hypothetical protein.
  
     0.496
Snas_4859
KEGG: scl:sce6782 hypothetical protein.
 
     0.487
Snas_4286
Hypothetical protein; KEGG: rfr:Rfer_2092 TolB-like.
  
     0.485
Snas_0677
Hypothetical protein; KEGG: predicted gene, 100041170.
  
     0.484
Snas_3549
Hypothetical protein; KEGG: scl:sce2686 WD repeat-containing protein.
  
     0.461
Snas_2005
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vfi:VF_B0018 DNA-binding protein RdgA.
  
     0.451
Snas_6088
KEGG: plu:plu3925 hypothetical protein.
  
     0.447
Snas_3329
PFAM: regulatory protein TetR; KEGG: bmj:BMULJ_05718 TetR family transcriptional regulator.
  
     0.435
Snas_4266
PFAM: GCN5-related N-acetyltransferase; KEGG: ccs:CCNA_00859 acetyltransferase, GNAT family.
  
     0.416
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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