STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4992TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: dac:Daci_3575 major facilitator transporter. (532 aa)    
Predicted Functional Partners:
Snas_4993
PFAM: regulatory protein TetR; KEGG: afw:Anae109_0884 TetR family transcriptional regulator.
      0.757
Snas_4994
Hypothetical protein.
       0.576
Snas_3794
KEGG: afw:Anae109_0991 major facilitator transporter.
  
     0.569
Snas_3807
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.518
Snas_4991
Hypothetical protein.
       0.469
Snas_4995
Putative phosphohistidine phosphatase, SixA; PFAM: NUDIX hydrolase; Phosphoglycerate mutase; KEGG: rpd:RPD_1191 NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.466
Snas_3307
KEGG: mes:Meso_3687 alpha amylase, catalytic region; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: alpha amylase catalytic region; Haloacid dehalogenase domain protein hydrolase; SMART: alpha amylase catalytic sub domain.
  
  
 0.465
Snas_5926
PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B5086 major facilitator transporter.
  
     0.409
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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