STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_6193PFAM: glycoside hydrolase family 43; KEGG: sde:Sde_0791 alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (502 aa)    
Predicted Functional Partners:
Snas_0206
PFAM: glycoside hydrolase family 43; KEGG: mxa:MXAN_5247 glycosy hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
   
 0.920
Snas_0202
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: vei:Veis_3457 alpha-N-arabinofuranosidase.
 
   
 0.727
Snas_6192
PFAM: GCN5-related N-acetyltransferase; KEGG: bpt:Bpet3229 acetyltransferase.
       0.655
Snas_2698
PFAM: glycoside hydrolase family 43; KEGG: mxa:MXAN_5247 glycosy hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.580
Snas_2877
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: bacterial alpha-L-rhamnosidase domain protein.
  
     0.548
Snas_6191
KEGG: pca:Pcar_0934 hypothetical protein.
       0.539
Snas_0809
Xylanase; KEGG: smt:Smal_2906 xylanase.
  
     0.500
Snas_3932
PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; KEGG: glycosyl hydrolase family 43 protein; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.494
Snas_4087
PFAM: glycoside hydrolase family 43; KEGG: scl:sce1485 putative Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.487
Snas_2888
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.481
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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