STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_1986KEGG: bba:Bd1307 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Xcel_1987
Hypothetical protein.
 
     0.948
Xcel_0102
PFAM: Excalibur domain protein; KEGG: xau:Xaut_0293 translation initiation factor IF-2.
  
     0.686
Xcel_1403
PFAM: ANTAR domain protein; KEGG: met:M446_0827 signal transduction histidine kinase.
  
     0.604
Xcel_0604
PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: similar to hedgehog protein.
  
     0.589
Xcel_1988
DNA topoisomerase (ATP-hydrolyzing); KEGG: bha:BH0006 DNA gyrase subunit B; PFAM: DNA gyrase subunit B domain protein; TOPRIM domain protein; ATP-binding region ATPase domain protein; DNA topoisomerase type IIA subunit B region 2 domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein.
       0.543
Xcel_0227
PFAM: regulatory protein TetR; KEGG: scl:sce6308 TetR family transcriptional regulator.
  
     0.538
Xcel_1985
KEGG: scl:sce5148 hypothetical protein.
       0.524
Xcel_1984
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: mxa:MXAN_5410 RNA polymerase sigma-70 factor, ECF subfamily.
       0.511
Xcel_1744
PFAM: integrase family protein; KEGG: ade:Adeh_2695 tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.501
Xcel_0205
Hypothetical protein.
  
     0.500
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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