STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps39Tetratricopeptide-like helical domain-containing protein. (851 aa)    
Predicted Functional Partners:
vps11
Vacuolar protein sorting-associated protein 11 homolog; May play a role in vesicle-mediated protein trafficking. Belongs to the VPS11 family.
   
 0.994
vps16
Vacuolar protein sorting-associated protein 16 homolog; May play a role in vesicle-mediated protein trafficking to endosomal/lysosomal compartments and in membrane docking/fusion reactions; Belongs to the VPS16 family.
   
 0.994
Vps18
Pep3_Vps18 domain-containing protein.
   
 0.992
vacA2
RING-type domain-containing protein.
   
 0.989
Vps33
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.979
Vps41
RING-type domain-containing protein; Belongs to the VPS41 family.
   
 0.973
vps45
Vacuolar protein sorting-associated protein 45; May play a role in vesicle-mediated protein trafficking from the Golgi stack through the trans-Golgi network; Belongs to the STXBP/unc-18/SEC1 family.
   
  
 0.875
DDB_G0288589
Vacuolar fusion protein CCZ1 homolog; Belongs to the CCZ1 family.
   
 
 0.863
Mon1
Uncharacterized protein.
   
 
 0.800
tom40
Translocase of outer mitochondrial membrane.
    
 
 0.758
Your Current Organism:
Dictyostelium discoideum
NCBI taxonomy Id: 44689
Other names: D. discoideum
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.