STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps51Vacuolar protein sorting-associated protein 51 homolog; May act as component of the GARP complex that is involved in retrograde transport from early and late endosomes to the trans-Golgi network (TGN); Belongs to the VPS51 family. (917 aa)    
Predicted Functional Partners:
DDB0186739
Vps53_N domain-containing protein.
   
 0.996
vps54
Vacuolar protein sorting 54 family protein.
   
 0.966
Vps52C
Uncharacterized protein.
   
 0.952
DDB0186291
Uncharacterized protein.
   
 0.951
DDB0186641
Uncharacterized protein.
    
 0.950
eipr1
EARP-interacting protein homolog; Belongs to the WD repeat EIPR1 family.
   
 
 0.906
Vps52A
Uncharacterized protein.
   
 0.891
Vps52B
Uncharacterized protein.
   
 0.891
DDB0206533
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
  
 0.838
cog5
Conserved oligomeric Golgi complex subunit 5.
   
 
 0.785
Your Current Organism:
Dictyostelium discoideum
NCBI taxonomy Id: 44689
Other names: D. discoideum
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