STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfdZAminotransferase, PLP-dependent. (402 aa)    
Predicted Functional Partners:
lysAC_1
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC).
  
 
 0.871
lysAC_2
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.871
Lboz_2219
Hypothetical protein.
       0.800
recJ
Single-stranded-DNA-specific exonuclease RecJ.
       0.800
trpE
Anthranilate synthase.
   
 0.765
argF
Ornithine carbamoyltransferase.
 
  
 0.761
pksJ_2
Polyketide synthase, type I.
  
 0.746
Lboz_0395
Polyketide synthase.
   
 0.727
Lboz_0433
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.719
Lboz_1473
acyl-CoA synthetase.
  
 
 0.717
Your Current Organism:
Fluoribacter bozemanae
NCBI taxonomy Id: 447
Other names: ATCC 33217, CIP 103872, DSM 16523, F. bozemanae, Fluoribacter bozemaniae, Legionella bozemaniae, Legionella bozemanii, NCTC 11368, strain ALLO1, strain WIGA
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.